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Marchf1 membrane associated ring-CH-type finger 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101827158, updated on 8-Mar-2024

Summary

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Gene symbol
Marchf1
Gene description
membrane associated ring-CH-type finger 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Also known as
March1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429185.1 (7463255..8252286, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801656.1 (9936831..10002167)

NW_024429185.1Genomic Context describing neighboring genes Neighboring gene transketolase like 2 Neighboring gene translation machinery associated 16 homolog Neighboring gene zinc finger CCHC domain-containing protein 9-like Neighboring gene oligosaccharyltransferase complex subunit OSTC-like Neighboring gene uncharacterized LOC110341843 Neighboring gene apelin receptor early endogenous ligand

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase MARCHF1
Names
E3 ubiquitin-protein ligase MARCH1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429185.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    7463255..8252286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040742223.1 → XP_040598157.1  E3 ubiquitin-protein ligase MARCHF1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0CTV9
    Conserved Domains (1) summary
    cd16698
    Location:328 → 379
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  2. XM_040742224.1 → XP_040598158.1  E3 ubiquitin-protein ligase MARCHF1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0CTV9
    Conserved Domains (1) summary
    cd16698
    Location:328 → 379
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  3. XM_040742222.1 → XP_040598156.1  E3 ubiquitin-protein ligase MARCHF1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0CTV9
    Conserved Domains (1) summary
    cd16698
    Location:328 → 379
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  4. XM_040742228.1 → XP_040598162.1  E3 ubiquitin-protein ligase MARCHF1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q0CJ52
    Conserved Domains (1) summary
    cd16698
    Location:75 → 126
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  5. XM_040742225.1 → XP_040598159.1  E3 ubiquitin-protein ligase MARCHF1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0CTV9
    Conserved Domains (1) summary
    cd16698
    Location:328 → 379
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  6. XM_040742229.1 → XP_040598163.1  E3 ubiquitin-protein ligase MARCHF1 isoform X6

    UniProtKB/TrEMBL
    A0A3Q0CJ52
    Conserved Domains (1) summary
    cd16698
    Location:79 → 130
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  7. XM_040742227.1 → XP_040598161.1  E3 ubiquitin-protein ligase MARCHF1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0CJ52
    Conserved Domains (1) summary
    cd16698
    Location:79 → 130
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  8. XM_040742226.1 → XP_040598160.1  E3 ubiquitin-protein ligase MARCHF1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0CTV9
    Conserved Domains (1) summary
    cd16698
    Location:332 → 383
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  9. XM_040742221.1 → XP_040598155.1  E3 ubiquitin-protein ligase MARCHF1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0CTV9
    Conserved Domains (1) summary
    cd16698
    Location:332 → 383
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins
Nucleotide Protein
Heading Accession and Version

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