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Pcdh15 protocadherin related 15 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101825918, updated on 8-Mar-2024

Summary

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Gene symbol
Pcdh15
Gene description
protocadherin related 15
See related
EnsemblRapid:ENSMAUG00000022156
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
44
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429208.1 (11472241..12767523, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801628.1 (5191367..5995960, complement)

NW_024429208.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110341004 Neighboring gene radial spoke head 14 homolog Neighboring gene uncharacterized LOC110340968 Neighboring gene G protein subunit alpha z Neighboring gene ADP/ATP translocase 2-like Neighboring gene uncharacterized LOC110340969 Neighboring gene 28S ribosomal protein S21, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inner ear development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory perception of sound IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stereocilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429208.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    11472241..12767523 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040732073.1 → XP_040588007.1  protocadherin-15 isoform X9

    UniProtKB/TrEMBL
    A0A3Q0CT14
    Conserved Domains (1) summary
    cd11304
    Location:727 → 820
    Cadherin_repeat; Cadherin tandem repeat domain

  2. XM_040732072.1 → XP_040588006.1  protocadherin-15 isoform X8

    UniProtKB/TrEMBL
    A0A3Q0CRI3
    Related
    ENSMAUP00000025740.2, ENSMAUT00000029763.2
    Conserved Domains (1) summary
    cd11304
    Location:727 → 820
    Cadherin_repeat; Cadherin tandem repeat domain

  3. XM_040732064.1 → XP_040587998.1  protocadherin-15 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0CR66, A0A3Q0CR75
    Related
    ENSMAUP00000031900.1, ENSMAUT00000067639.1
    Conserved Domains (1) summary
    cd11304
    Location:727 → 820
    Cadherin_repeat; Cadherin tandem repeat domain

  4. XM_040732063.1 → XP_040587997.1  protocadherin-15 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0CR66, A0A3Q0CR75
    Related
    ENSMAUP00000025736.2, ENSMAUT00000029759.2
    Conserved Domains (1) summary
    cd11304
    Location:727 → 820
    Cadherin_repeat; Cadherin tandem repeat domain

  5. XM_040732062.1 → XP_040587996.1  protocadherin-15 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0CR66, A0A3Q0CR75
    Related
    ENSMAUP00000026071.1, ENSMAUT00000076938.1
    Conserved Domains (1) summary
    cd11304
    Location:727 → 820
    Cadherin_repeat; Cadherin tandem repeat domain

  6. XM_040732071.1 → XP_040588005.1  protocadherin-15 isoform X6

    UniProtKB/TrEMBL
    A0A3Q0CR66
    Related
    ENSMAUP00000025738.2, ENSMAUT00000029761.2
    Conserved Domains (1) summary
    cd11304
    Location:722 → 815
    Cadherin_repeat; Cadherin tandem repeat domain

  7. XM_040732069.1 → XP_040588003.1  protocadherin-15 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0CR66, A0A3Q0CR75
    Related
    ENSMAUP00000043665.1, ENSMAUT00000065524.1
    Conserved Domains (1) summary
    cd11304
    Location:722 → 815
    Cadherin_repeat; Cadherin tandem repeat domain

  8. XM_040732065.1 → XP_040587999.1  protocadherin-15 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0CR66
    Conserved Domains (1) summary
    cd11304
    Location:727 → 820
    Cadherin_repeat; Cadherin tandem repeat domain

  9. XM_040732070.1 → XP_040588004.1  protocadherin-15 isoform X5

    UniProtKB/TrEMBL
    A0A3Q0CR66
    Conserved Domains (1) summary
    cd11304
    Location:727 → 820
    Cadherin_repeat; Cadherin tandem repeat domain

  10. XM_040732068.1 → XP_040588002.1  protocadherin-15 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0CR66, A0A3Q0CR75
    Conserved Domains (1) summary
    cd11304
    Location:727 → 820
    Cadherin_repeat; Cadherin tandem repeat domain

  11. XM_021227541.2 → XP_021083200.1  protocadherin-15 isoform X7

    UniProtKB/TrEMBL
    A0A3Q0CKU6, A0A3Q0CR66
    Related
    ENSMAUP00000025733.2, ENSMAUT00000029756.2
    Conserved Domains (1) summary
    cd11304
    Location:722 → 815
    Cadherin_repeat; Cadherin tandem repeat domain

RNA

  1. XR_005871270.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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