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Vma21 vacuolar ATPase assembly factor VMA21 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101823874, updated on 8-Mar-2024

Summary

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Gene symbol
Vma21
Gene description
vacuolar ATPase assembly factor VMA21
See related
EnsemblRapid:ENSMAUG00000002037
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Vma21 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429188.1 (116114527..116124007)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801820.1 (543849..552976, complement)

NW_024429188.1Genomic Context describing neighboring genes Neighboring gene igE-binding protein-like Neighboring gene G protein-coupled receptor 50 Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA61

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar ATPase assembly integral membrane protein VMA21
Names
VMA21 vacuolar H+-ATPase homolog
VMA21, vacuolar ATPase assembly factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429188.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    116114527..116124007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040744725.1 → XP_040600659.1  vacuolar ATPase assembly integral membrane protein VMA21 isoform X1

    UniProtKB/TrEMBL
    A0A1U8CQQ5
    Conserved Domains (1) summary
    pfam09446
    Location:44 → 86
    VMA21; VMA21-like domain

  2. XM_013125411.3 → XP_012980865.1  vacuolar ATPase assembly integral membrane protein VMA21 isoform X1

    UniProtKB/TrEMBL
    A0A1U8CQQ5
    Related
    ENSMAUP00000036779.1, ENSMAUT00000040278.1
    Conserved Domains (1) summary
    pfam09446
    Location:44 → 86
    VMA21; VMA21-like domain

  3. XM_005086261.4 → XP_005086318.1  vacuolar ATPase assembly integral membrane protein VMA21 isoform X2

    See identical proteins and their annotated locations for XP_005086318.1

    UniProtKB/TrEMBL
    A0A1U7R2U0
    Related
    ENSMAUP00000002448.1, ENSMAUT00000002718.2
    Conserved Domains (1) summary
    pfam09446
    Location:25 → 88
    VMA21; VMA21-like domain
Nucleotide Protein
Heading Accession and Version

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