U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Rbfox1 RNA binding fox-1 homolog 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101823315, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Rbfox1
Gene description
RNA binding fox-1 homolog 1
See related
EnsemblRapid:ENSMAUG00000020570
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429191.1 (4700601..6769153, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801720.1 (6169905..7070055)

NW_024429191.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC121141246 Neighboring gene uncharacterized LOC121141095 Neighboring gene single-stranded DNA-binding protein, mitochondrial-like Neighboring gene uncharacterized LOC110342992 Neighboring gene cytochrome b-c1 complex subunit 7-like Neighboring gene 60S ribosomal protein L17-like Neighboring gene eukaryotic elongation factor 2 lysine methyltransferase Neighboring gene ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
RNA binding protein fox-1 homolog 1
Names
RNA binding protein, fox-1 homolog 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429191.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    4700601..6769153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040747948.1 → XP_040603882.1  RNA binding protein fox-1 homolog 1 isoform X1

    Conserved Domains (3) summary
    TIGR01628
    Location:292 → 443
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    smart00360
    Location:302 → 372
    RRM; RNA recognition motif
    TIGR01661
    Location:197 → 372
    ELAV_HUD_SF; ELAV/HuD family splicing factor

  2. XM_040747949.1 → XP_040603883.1  RNA binding protein fox-1 homolog 1 isoform X2

    Conserved Domains (3) summary
    TIGR01628
    Location:241 → 392
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    smart00360
    Location:251 → 321
    RRM; RNA recognition motif
    PRK03427
    Location:138 → 255
    PRK03427; cell division protein ZipA; Provisional

  3. XM_040747950.1 → XP_040603884.1  RNA binding protein fox-1 homolog 1 isoform X3

    Conserved Domains (3) summary
    TIGR01628
    Location:143 → 294
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    smart00360
    Location:153 → 223
    RRM; RNA recognition motif
    PRK03427
    Location:40 → 157
    PRK03427; cell division protein ZipA; Provisional

  4. XM_040747953.1 → XP_040603887.1  RNA binding protein fox-1 homolog 1 isoform X6

    Conserved Domains (2) summary
    smart00360
    Location:141 → 211
    RRM; RNA recognition motif
    COG0724
    Location:86 → 275
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  5. XM_040747951.1 → XP_040603885.1  RNA binding protein fox-1 homolog 1 isoform X4

    Related
    ENSMAUP00000027341.1, ENSMAUT00000035382.1
    Conserved Domains (3) summary
    TIGR01628
    Location:131 → 282
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    smart00360
    Location:141 → 211
    RRM; RNA recognition motif
    PRK03427
    Location:48 → 145
    PRK03427; cell division protein ZipA; Provisional

  6. XM_040747957.1 → XP_040603891.1  RNA binding protein fox-1 homolog 1 isoform X9

    Related
    ENSMAUP00000043783.1, ENSMAUT00000073422.1
    Conserved Domains (3) summary
    pfam12414
    Location:276 → 365
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:140 → 215
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
    NF033875
    Location:35 → 200
    Agg_substance; LPXTG-anchored aggregation substance

  7. XM_040747952.1 → XP_040603886.1  RNA binding protein fox-1 homolog 1 isoform X5

    Conserved Domains (3) summary
    TIGR01628
    Location:127 → 278
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    smart00360
    Location:137 → 207
    RRM; RNA recognition motif
    PRK03427
    Location:18 → 141
    PRK03427; cell division protein ZipA; Provisional

  8. XM_040747954.1 → XP_040603888.1  RNA binding protein fox-1 homolog 1 isoform X7

    Related
    ENSMAUP00000042650.1, ENSMAUT00000077057.1
    Conserved Domains (3) summary
    pfam12414
    Location:272 → 362
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:136 → 211
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
    NF033875
    Location:31 → 196
    Agg_substance; LPXTG-anchored aggregation substance

  9. XM_040747956.1 → XP_040603890.1  RNA binding protein fox-1 homolog 1 isoform X8

    Related
    ENSMAUP00000023415.2, ENSMAUT00000027424.2
    Conserved Domains (3) summary
    TIGR01628
    Location:127 → 278
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    smart00360
    Location:137 → 207
    RRM; RNA recognition motif
    PRK03427
    Location:18 → 141
    PRK03427; cell division protein ZipA; Provisional
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.