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KDM3A lysine demethylase 3A [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101820866, updated on 8-Mar-2024

Summary

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Gene symbol
KDM3A
Gene description
lysine demethylase 3A
See related
Ensembl:ENSFALG00000010109
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
25
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 4 NC_021675.1 (66488196..66517815)

Chromosome 4 - NC_021675.1Genomic Context describing neighboring genes Neighboring gene inner membrane mitochondrial protein Neighboring gene receptor accessory protein 1 Neighboring gene charged multivesicular body protein 3 Neighboring gene ring finger protein 103

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021675.1 Chromosome 4 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 3A
Names
lysine (K)-specific demethylase 3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021675.1 Reference FicAlb1.5 Primary Assembly

    Range
    66488196..66517815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005045573.2 → XP_005045630.1  lysine-specific demethylase 3A isoform X1

    UniProtKB/TrEMBL
    A0A803VM70, U3K6B6
    Related
    ENSFALP00000010570.1, ENSFALT00000010612.2
    Conserved Domains (2) summary
    smart00558
    Location:1084 → 1138
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1155 → 1268
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_016298151.1 → XP_016153637.1  lysine-specific demethylase 3A isoform X2

    UniProtKB/TrEMBL
    A0A803VM70
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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