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SATB2 SATB homeobox 2 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101820681, updated on 8-Mar-2024

Summary

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Gene symbol
SATB2
Gene description
SATB homeobox 2
See related
Ensembl:ENSFALG00000004242
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 7 NC_021679.1 (10658281..10787666, complement)

Chromosome 7 - NC_021679.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101821798 Neighboring gene phospholipase C like 1 (inactive) Neighboring gene chromosome 7 C2orf69 homolog Neighboring gene tRNA-yW synthesizing protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021679.1 Chromosome 7 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein SATB2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021679.1 Reference FicAlb1.5 Primary Assembly

    Range
    10658281..10787666 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005049208.1 → XP_005049265.1  DNA-binding protein SATB2

    See identical proteins and their annotated locations for XP_005049265.1

    UniProtKB/TrEMBL
    U3JNR9
    Conserved Domains (4) summary
    smart00389
    Location:554 → 611
    HOX; Homeodomain
    cd11585
    Location:2 → 97
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:419 → 498
    CUT; CUT domain
    pfam16557
    Location:104 → 174
    CUTL; CUT1-like DNA-binding domain of SATB

  2. XM_005049209.1 → XP_005049266.1  DNA-binding protein SATB2

    See identical proteins and their annotated locations for XP_005049266.1

    UniProtKB/TrEMBL
    U3JNR9
    Related
    ENSFALP00000004423.1, ENSFALT00000004446.2
    Conserved Domains (4) summary
    smart00389
    Location:554 → 611
    HOX; Homeodomain
    cd11585
    Location:2 → 97
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:419 → 498
    CUT; CUT domain
    pfam16557
    Location:104 → 174
    CUTL; CUT1-like DNA-binding domain of SATB
Nucleotide Protein
Heading Accession and Version

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