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CLP1 cleavage factor polyribonucleotide kinase subunit 1 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101819677, updated on 11-Apr-2024

Summary

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Gene symbol
CLP1
Gene description
cleavage factor polyribonucleotide kinase subunit 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 5 NC_021677.1 (9338787..9340924)

Chromosome 5 - NC_021677.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-1(III) chain-like Neighboring gene translocase of inner mitochondrial membrane 10 Neighboring gene ubiquitin conjugating enzyme E2 L6 Neighboring gene serpin family G member 1 Neighboring gene yippee like 4 Neighboring gene zinc finger DHHC-type palmitoyltransferase 5 Neighboring gene mediator complex subunit 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021677.1 Chromosome 5 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polynucleotide 5'-hydroxyl-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyribonucleotide 5'-hydroxyl-kinase Clp1
Names
cleavage and polyadenylation factor I subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021677.1 Reference FicAlb1.5 Primary Assembly

    Range
    9338787..9340924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005046479.1 → XP_005046536.1  polyribonucleotide 5'-hydroxyl-kinase Clp1

    See identical proteins and their annotated locations for XP_005046536.1

    UniProtKB/TrEMBL
    U3K9D2
    Conserved Domains (2) summary
    COG5623
    Location:12 → 423
    CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
    pfam16575
    Location:121 → 306
    CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
Nucleotide Protein
Heading Accession and Version

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