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POLR2E RNA polymerase II, I and III subunit E [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101817569, updated on 8-Mar-2024

Summary

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Gene symbol
POLR2E
Gene description
RNA polymerase II, I and III subunit E
See related
Ensembl:ENSFALG00000013986
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 28
Exon count:
7
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 28 NC_021699.1 (3439881..3441991, complement)

Chromosome 28 - NC_021699.1Genomic Context describing neighboring genes Neighboring gene calponin 2 Neighboring gene Rho GTPase activating protein 45 Neighboring gene glutathione peroxidase 4 Neighboring gene strawberry notch homolog 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021699.1 Chromosome 28 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerases I, II, and III subunit RPABC1
Names
RNA polymerase II subunit E
polymerase (RNA) II (DNA directed) polypeptide E, 25kDa
polymerase (RNA) II subunit E

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021699.1 Reference FicAlb1.5 Primary Assembly

    Range
    3439881..3441991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005060148.1 → XP_005060205.1  DNA-directed RNA polymerases I, II, and III subunit RPABC1

    UniProtKB/TrEMBL
    U3KHU3
    Related
    ENSFALP00000014597.2, ENSFALT00000014660.2
    Conserved Domains (3) summary
    PLN03111
    Location:23 → 209
    PLN03111; DNA-directed RNA polymerase II subunit family protein; Provisional
    pfam01191
    Location:138 → 209
    RNA_pol_Rpb5_C; RNA polymerase Rpb5, C-terminal domain
    pfam03871
    Location:19 → 92
    RNA_pol_Rpb5_N; RNA polymerase Rpb5, N-terminal domain
Nucleotide Protein
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