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DMTF1 cyclin D binding myb like transcription factor 1 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101817263, updated on 8-Mar-2024

Summary

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Gene symbol
DMTF1
Gene description
cyclin D binding myb like transcription factor 1
See related
Ensembl:ENSFALG00000001933
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1A
Exon count:
17
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 1A NC_021672.1 (7619700..7643982, complement)

Chromosome 1A - NC_021672.1Genomic Context describing neighboring genes Neighboring gene SUV39H2 histone lysine methyltransferase Neighboring gene DNA cross-link repair 1C Neighboring gene meiosis/spermiogenesis associated 1 Neighboring gene endosome-lysosome associated apoptosis and autophagy regulator family member 2 Neighboring gene glutamate metabotropic receptor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021672.1 Chromosome 1A Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-D-binding Myb-like transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021672.1 Reference FicAlb1.5 Primary Assembly

    Range
    7619700..7643982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005039092.2 → XP_005039149.1  cyclin-D-binding Myb-like transcription factor 1 isoform X2

    Conserved Domains (4) summary
    smart00717
    Location:299 → 355
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:363 → 413
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:299 → 354
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:253 → 309
    Myb_DNA-bind_6; Myb-like DNA-binding domain

  2. XM_005039093.2 → XP_005039150.1  cyclin-D-binding Myb-like transcription factor 1 isoform X3

    Conserved Domains (4) summary
    smart00717
    Location:300 → 356
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:364 → 414
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:300 → 355
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:254 → 310
    Myb_DNA-bind_6; Myb-like DNA-binding domain

  3. XM_005039091.2 → XP_005039148.1  cyclin-D-binding Myb-like transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    U3JGV4
    Related
    ENSFALP00000002008.1, ENSFALT00000002020.2
    Conserved Domains (4) summary
    smart00717
    Location:300 → 356
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:364 → 414
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:300 → 355
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:254 → 310
    Myb_DNA-bind_6; Myb-like DNA-binding domain
Nucleotide Protein
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