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LINGO1 leucine rich repeat and Ig domain containing 1 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101816586, updated on 8-Mar-2024

Summary

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Gene symbol
LINGO1
Gene description
leucine rich repeat and Ig domain containing 1
See related
Ensembl:ENSFALG00000015209
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 10 NC_021682.1 (1427500..1490912, complement)

Chromosome 10 - NC_021682.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107603853 Neighboring gene high mobility group 20A Neighboring gene chondroitin sulfate proteoglycan 4 Neighboring gene sorting nexin 33 Neighboring gene snurportin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021682.1 Chromosome 10 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021682.1 Reference FicAlb1.5 Primary Assembly

    Range
    1427500..1490912 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005051541.2 → XP_005051598.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A803VTZ3
    Related
    ENSFALP00000026199.1, ENSFALT00000041318.1
    Conserved Domains (6) summary
    cd00116
    Location:119 → 362
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    pfam07679
    Location:471 → 557
    I-set; Immunoglobulin I-set domain
    sd00033
    Location:140 → 163
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:163 → 222
    LRR_8; Leucine rich repeat
    cl11960
    Location:482 → 557
    Ig; Immunoglobulin domain
    cl15307
    Location:412 → 448
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  2. XM_005051545.2 → XP_005051602.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X4

    See identical proteins and their annotated locations for XP_005051602.1

    UniProtKB/TrEMBL
    A0A803VTZ3
    Conserved Domains (5) summary
    TIGR00864
    Location:334 → 414
    PCC; polycystin cation channel protein
    sd00033
    Location:90 → 113
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:113 → 172
    LRR_8; Leucine rich repeat
    cd20969
    Location:416 → 507
    IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
    cd21340
    Location:183 → 364
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  3. XM_005051544.2 → XP_005051601.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X4

    See identical proteins and their annotated locations for XP_005051601.1

    UniProtKB/TrEMBL
    A0A803VTZ3
    Conserved Domains (5) summary
    TIGR00864
    Location:334 → 414
    PCC; polycystin cation channel protein
    sd00033
    Location:90 → 113
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:113 → 172
    LRR_8; Leucine rich repeat
    cd20969
    Location:416 → 507
    IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
    cd21340
    Location:183 → 364
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  4. XM_005051542.2 → XP_005051599.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A803VTZ3
    Conserved Domains (6) summary
    cd00116
    Location:97 → 340
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    pfam07679
    Location:449 → 535
    I-set; Immunoglobulin I-set domain
    sd00033
    Location:118 → 141
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:141 → 200
    LRR_8; Leucine rich repeat
    cl11960
    Location:460 → 535
    Ig; Immunoglobulin domain
    cl15307
    Location:390 → 426
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  5. XM_005051543.2 → XP_005051600.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A803VTZ3, U3KLC0
    Related
    ENSFALP00000015824.2, ENSFALT00000015889.2
    Conserved Domains (5) summary
    TIGR00864
    Location:347 → 427
    PCC; polycystin cation channel protein
    sd00033
    Location:103 → 126
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:126 → 185
    LRR_8; Leucine rich repeat
    cd20969
    Location:429 → 520
    IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
    cd21340
    Location:196 → 377
    PPP1R42; protein phosphatase 1 regulatory subunit 42
Nucleotide Protein
Heading Accession and Version

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