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SPEN spen family transcriptional repressor [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101816324, updated on 8-Mar-2024

Summary

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Gene symbol
SPEN
Gene description
spen family transcriptional repressor
See related
Ensembl:ENSFALG00000003551
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
16
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 21 NC_021692.1 (630107..698083)

Chromosome 21 - NC_021692.1Genomic Context describing neighboring genes Neighboring gene filamin binding LIM protein 1 Neighboring gene uncharacterized LOC101816668 Neighboring gene uncharacterized LOC107604116 Neighboring gene uncharacterized LOC101815877 Neighboring gene zinc finger and BTB domain containing 17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021692.1 Chromosome 21 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
msx2-interacting protein
Names
spen homolog, transcriptional regulator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021692.1 Reference FicAlb1.5 Primary Assembly

    Range
    630107..698083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005057498.1 → XP_005057555.1  msx2-interacting protein

    UniProtKB/TrEMBL
    U3JLP9
    Related
    ENSFALP00000003703.1, ENSFALT00000003717.2
    Conserved Domains (6) summary
    COG0724
    Location:8 → 81
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12348
    Location:7 → 81
    RRM1_SHARP; RNA recognition motif 1 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12349
    Location:336 → 409
    RRM2_SHARP; RNA recognition motif 2 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12350
    Location:436 → 509
    RRM3_SHARP; RNA recognition motif 3 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12351
    Location:510 → 586
    RRM4_SHARP; RNA recognition motif 4 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    pfam07744
    Location:3397 → 3518
    SPOC; SPOC domain
Nucleotide Protein
Heading Accession and Version

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