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KPNA1 karyopherin subunit alpha 1 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101816153, updated on 8-Mar-2024

Summary

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Gene symbol
KPNA1
Gene description
karyopherin subunit alpha 1
See related
Ensembl:ENSFALG00000004916
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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See KPNA1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 1 NC_021671.1 (92841611..92880964)

Chromosome 1 - NC_021671.1Genomic Context describing neighboring genes Neighboring gene sodium channel epithelial 1 subunit alpha Neighboring gene F-box protein 40 Neighboring gene family with sequence similarity 162 member A Neighboring gene mitochondrial matrix import factor 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021671.1 Chromosome 1 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear import signal receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear localization sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NLS-bearing protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in postsynapse to nucleus signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
importin subunit alpha-5
Names
karyopherin alpha 1 (importin alpha 5)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021671.1 Reference FicAlb1.5 Primary Assembly

    Range
    92841611..92880964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016302379.1 → XP_016157865.1  importin subunit alpha-5 isoform X1

    UniProtKB/TrEMBL
    U3JQT2
    Related
    ENSFALP00000005136.2, ENSFALT00000005161.2

  2. XM_005038457.2 → XP_005038514.1  importin subunit alpha-5 isoform X2

    UniProtKB/TrEMBL
    U3JQT0
    Related
    ENSFALP00000005134.2, ENSFALT00000005159.2
    Conserved Domains (5) summary
    cd00020
    Location:120 → 241
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam01749
    Location:6 → 104
    IBB; Importin beta binding domain
    pfam13646
    Location:128 → 237
    HEAT_2; HEAT repeats
    pfam16186
    Location:466 → 510
    Arm_3; Atypical Arm repeat
    sd00043
    Location:128 → 154
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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