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TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101814641, updated on 8-Mar-2024

Summary

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Gene symbol
TAF1D
Gene description
TATA-box binding protein associated factor, RNA polymerase I subunit D
See related
Ensembl:ENSFALG00000000293
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
19
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 1 NC_021671.1 (82967695..82980985)

Chromosome 1 - NC_021671.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 17 Neighboring gene chromosome 1 open reading frame, human C11orf54 Neighboring gene centrosomal protein 295 Neighboring gene uncharacterized LOC101814070

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021671.1 Chromosome 1 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase transcription factor SL1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA box-binding protein-associated factor RNA polymerase I subunit D
Names
TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021671.1 Reference FicAlb1.5 Primary Assembly

    Range
    82967695..82980985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016301482.1 → XP_016156968.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    UniProtKB/TrEMBL
    U3JBZ6
    Conserved Domains (1) summary
    pfam15333
    Location:87 → 321
    TAF1D; TATA box-binding protein-associated factor 1D

  2. XM_016301504.1 → XP_016156990.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    UniProtKB/TrEMBL
    U3JBZ6
    Conserved Domains (1) summary
    pfam15333
    Location:87 → 321
    TAF1D; TATA box-binding protein-associated factor 1D

  3. XM_016301491.1 → XP_016156977.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    UniProtKB/TrEMBL
    U3JBZ6
    Conserved Domains (1) summary
    pfam15333
    Location:87 → 321
    TAF1D; TATA box-binding protein-associated factor 1D

  4. XM_016301476.1 → XP_016156962.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    UniProtKB/TrEMBL
    U3JBZ6
    Conserved Domains (1) summary
    pfam15333
    Location:87 → 321
    TAF1D; TATA box-binding protein-associated factor 1D

  5. XM_016301489.1 → XP_016156975.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    UniProtKB/TrEMBL
    U3JBZ6
    Conserved Domains (1) summary
    pfam15333
    Location:87 → 321
    TAF1D; TATA box-binding protein-associated factor 1D

  6. XM_016301484.1 → XP_016156970.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    UniProtKB/TrEMBL
    U3JBZ6
    Conserved Domains (1) summary
    pfam15333
    Location:87 → 321
    TAF1D; TATA box-binding protein-associated factor 1D

  7. XM_016301496.1 → XP_016156982.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    UniProtKB/TrEMBL
    U3JBZ6
    Conserved Domains (1) summary
    pfam15333
    Location:87 → 321
    TAF1D; TATA box-binding protein-associated factor 1D

  8. XM_016301505.1 → XP_016156991.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    UniProtKB/TrEMBL
    U3JBZ6
    Related
    ENSFALP00000000300.2, ENSFALT00000000303.2
    Conserved Domains (1) summary
    pfam15333
    Location:87 → 321
    TAF1D; TATA box-binding protein-associated factor 1D
Nucleotide Protein
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