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EGR1 early growth response 1 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101813465, updated on 8-Mar-2024

Summary

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Gene symbol
EGR1
Gene description
early growth response 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) Unplaced Scaffold NW_004775931.1 (575976..578786)

NW_004775931.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 3B Neighboring gene receptor accessory protein 2 Neighboring gene uncharacterized LOC101813666

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004775931.1 Unplaced Scaffold Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
early growth response protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NW_004775931.1 Reference FicAlb1.5 Primary Assembly

    Range
    575976..578786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005061895.2 → XP_005061952.1  early growth response protein 1

    UniProtKB/TrEMBL
    U3JL97
    Conserved Domains (6) summary
    COG5048
    Location:338 → 396
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:313 → 335
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:311 → 335
    zf-C2H2; Zinc finger, C2H2 type
    pfam11914
    Location:401 → 497
    DUF3432; Domain of unknown function (DUF3432)
    pfam11928
    Location:111 → 182
    DUF3446; Domain of unknown function (DUF3446)
    pfam13465
    Location:355 → 380
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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