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AMIGO3 adhesion molecule with Ig like domain 3 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101812843, updated on 8-Mar-2024

Summary

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Gene symbol
AMIGO3
Gene description
adhesion molecule with Ig like domain 3
See related
Ensembl:ENSFALG00000014350
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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See AMIGO3 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
1
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 12 NC_021684.1 (3792923..3795900, complement)

Chromosome 12 - NC_021684.1Genomic Context describing neighboring genes Neighboring gene ATR interacting protein Neighboring gene shisa family member 5 Neighboring gene ring finger protein 123 Neighboring gene GDP-mannose pyrophosphorylase B Neighboring gene inositol hexakisphosphate kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021684.1 Chromosome 12 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amphoterin-induced protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021684.1 Reference FicAlb1.5 Primary Assembly

    Range
    3792923..3795900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005052900.2 → XP_005052957.1  amphoterin-induced protein 3

    UniProtKB/TrEMBL
    U3KIW1
    Related
    ENSFALP00000014965.1, ENSFALT00000015030.2
    Conserved Domains (5) summary
    smart00013
    Location:74 → 104
    LRRNT; Leucine rich repeat N-terminal domain
    smart00410
    Location:324 → 417
    IG_like; Immunoglobulin like
    cd00116
    Location:90 → 249
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:85 → 102
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:101 → 161
    LRR_8; Leucine rich repeat
Nucleotide Protein
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