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CASQ2 calsequestrin 2 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101812214, updated on 8-Mar-2024

Summary

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Gene symbol
CASQ2
Gene description
calsequestrin 2
See related
Ensembl:ENSFALG00000006100
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 1 NC_021671.1 (98974167..99009689, complement)

Chromosome 1 - NC_021671.1Genomic Context describing neighboring genes Neighboring gene chromodomain helicase DNA binding protein 1 like Neighboring gene VANGL planar cell polarity protein 1 Neighboring gene nescient helix-loop-helix 2 Neighboring gene solute carrier family 22 member 15 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021671.1 Chromosome 1 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in sarcoplasmic reticulum lumen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calsequestrin-2
Names
calsequestrin 2 (cardiac muscle)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021671.1 Reference FicAlb1.5 Primary Assembly

    Range
    98974167..99009689 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005038619.2 → XP_005038676.1  calsequestrin-2

    UniProtKB/TrEMBL
    U3JUA5
    Related
    ENSFALP00000006359.1, ENSFALT00000006388.2
    Conserved Domains (4) summary
    cd03065
    Location:24 → 143
    PDI_b_Calsequestrin_N; PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow ...
    cd03066
    Location:145 → 246
    PDI_b_Calsequestrin_middle; PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow ...
    cd03074
    Location:247 → 366
    PDI_b'_Calsequestrin_C; Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient ...
    pfam01216
    Location:22 → 371
    Calsequestrin; Calsequestrin
Nucleotide Protein
Heading Accession and Version

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