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SCX scleraxis bHLH transcription factor [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101807547, updated on 8-Mar-2024

Summary

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Gene symbol
SCX
Gene description
scleraxis bHLH transcription factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Also known as
SCXA
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) Unplaced Scaffold NW_004775951.1 (221901..229404)

NW_004775951.1Genomic Context describing neighboring genes Neighboring gene maestro heat-like repeat-containing protein family member 1 Neighboring gene BOP1 ribosomal biogenesis factor Neighboring gene heat shock transcription factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004775951.1 Unplaced Scaffold Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basic helix-loop-helix transcription factor scleraxis
Names
scleraxis homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NW_004775951.1 Reference FicAlb1.5 Primary Assembly

    Range
    221901..229404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005062128.2 → XP_005062185.1  basic helix-loop-helix transcription factor scleraxis

    UniProtKB/TrEMBL
    U3JC67
    Conserved Domains (1) summary
    pfam00010
    Location:67 → 118
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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