U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TRIM55 tripartite motif containing 55 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101805972, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
TRIM55
Gene description
tripartite motif containing 55
See related
Ensembl:ENSFALG00000005453
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 2 NC_021673.1 (121412319..121449498)

Chromosome 2 - NC_021673.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene alcohol dehydrogenase iron containing 1 Neighboring gene corticotropin releasing hormone

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_021673.1 Chromosome 2 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tripartite motif-containing protein 55

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021673.1 Reference FicAlb1.5 Primary Assembly

    Range
    121412319..121449498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005042130.2 → XP_005042187.1  tripartite motif-containing protein 55 isoform X2

    UniProtKB/TrEMBL
    A0A803VKV7
    Related
    ENSFALP00000023363.1, ENSFALT00000027418.1
    Conserved Domains (3) summary
    smart00336
    Location:128 → 168
    BBOX; B-Box-type zinc finger
    cd00162
    Location:33 → 92
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cl23765
    Location:175 → 278
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  2. XM_005042129.2 → XP_005042186.1  tripartite motif-containing protein 55 isoform X1

    UniProtKB/TrEMBL
    A0A803VP12, U3JSB8
    Related
    ENSFALP00000024468.1, ENSFALT00000033949.1
    Conserved Domains (4) summary
    cd00162
    Location:33 → 92
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam00643
    Location:126 → 168
    zf-B_box; B-box zinc finger
    pfam05466
    Location:374 → 531
    BASP1; Brain acid soluble protein 1 (BASP1 protein)
    cl23765
    Location:175 → 300
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.