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BCO2 beta-carotene oxygenase 2 [ Anas platyrhynchos (mallard) ]

Gene ID: 101802069, updated on 8-Mar-2024

Summary

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Gene symbol
BCO2
Gene description
beta-carotene oxygenase 2
See related
EnsemblRapid:ENSAPLG00030023656
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 25
Exon count:
15
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 25 NC_051796.1 (7502200..7532693, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 25 NC_040070.1 (7346348..7389604, complement)

Chromosome 25 - NC_051796.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106020461 Neighboring gene 6-pyruvoyltetrahydropterin synthase Neighboring gene testis expressed 12 Neighboring gene interleukin 18 Neighboring gene succinate dehydrogenase complex subunit D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-carotene 15,15'-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta,beta-carotene 9',10'-oxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051796.1 Reference ZJU1.0 Primary Assembly

    Range
    7502200..7532693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013109666.3 → XP_012965120.1  beta,beta-carotene 9',10'-oxygenase isoform X1

    UniProtKB/TrEMBL
    A0A8B9SH56
    Related
    ENSAPLP00030039635.1, ENSAPLT00030061878.1
    Conserved Domains (1) summary
    pfam03055
    Location:96 → 608
    RPE65; Retinal pigment epithelial membrane protein

  2. XM_013109667.3 → XP_012965121.1  beta,beta-carotene 9',10'-oxygenase isoform X2

    UniProtKB/TrEMBL
    A0A8B9SH56, U3IET9
    Related
    ENSAPLP00030039667.1, ENSAPLT00030061932.1
    Conserved Domains (1) summary
    pfam03055
    Location:65 → 577
    RPE65; Retinal pigment epithelial membrane protein

  3. XM_021279455.3 → XP_021135130.1  beta,beta-carotene 9',10'-oxygenase isoform X3

    UniProtKB/TrEMBL
    A0A493TGY4
    Related
    ENSAPLP00030039612.1, ENSAPLT00030061827.1
    Conserved Domains (1) summary
    pfam03055
    Location:52 → 561
    RPE65; Retinal pigment epithelial membrane protein

  4. XM_021279456.2 → XP_021135131.1  beta,beta-carotene 9',10'-oxygenase isoform X4

    Conserved Domains (1) summary
    pfam03055
    Location:1 → 467
    RPE65; Retinal pigment epithelial membrane protein
Nucleotide Protein
Heading Accession and Version

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