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CPSF2 cleavage and polyadenylation specific factor 2 [ Anas platyrhynchos (mallard) ]

Gene ID: 101800700, updated on 11-Apr-2024

Summary

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Gene symbol
CPSF2
Gene description
cleavage and polyadenylation specific factor 2
Locus tag
Anapl_03283
See related
EnsemblRapid:ENSAPLG00030002731
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 5 NC_051776.1 (17201930..17220992, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 4 NC_040049.1 (19508799..19527004, complement)

Chromosome 5 - NC_051776.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 24 member 4 Neighboring gene uncharacterized LOC106017688 Neighboring gene NADH:ubiquinone oxidoreductase subunit B1 Neighboring gene ataxin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor subunit 2
Names
Cleavage and polyadenylation specificity factor subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051776.1 Reference ZJU1.0 Primary Assembly

    Range
    17201930..17220992 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038180258.1 → XP_038036186.1  cleavage and polyadenylation specificity factor subunit 2

    UniProtKB/TrEMBL
    R0L2X8
    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

  2. XM_038180257.1 → XP_038036185.1  cleavage and polyadenylation specificity factor subunit 2

    UniProtKB/TrEMBL
    R0L2X8
    Related
    ENSAPLP00030006174.1, ENSAPLT00030007622.1
    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal
Nucleotide Protein
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