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CTSB cathepsin B [ Anas platyrhynchos (mallard) ]

Gene ID: 101794268, updated on 8-Mar-2024

Summary

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Gene symbol
CTSB
Gene description
cathepsin B
Locus tag
Anapl_13341
See related
EnsemblRapid:ENSAPLG00030006177
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See CTSB in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 3 NC_051774.1 (116380897..116388185)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 3 NC_040048.1 (114796491..114805882)

Chromosome 3 - NC_051774.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113843354 Neighboring gene uncharacterized LOC119716526 Neighboring gene farnesyl-diphosphate farnesyltransferase 1 Neighboring gene nei like DNA glycosylase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cathepsin B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051774.1 Reference ZJU1.0 Primary Assembly

    Range
    116380897..116388185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038176845.1 → XP_038032773.1  cathepsin B

    UniProtKB/TrEMBL
    R0JD86, U3IUS1
    Related
    ENSAPLP00030012546.1, ENSAPLT00030016562.1
    Conserved Domains (2) summary
    cd02620
    Location:89 → 337
    Peptidase_C1A_CathepsinB; Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an ...
    pfam08127
    Location:34 → 73
    Propeptide_C1; Peptidase family C1 propeptide
Nucleotide Protein
Heading Accession and Version

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