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DCHS1 dachsous cadherin-related 1 [ Anas platyrhynchos (mallard) ]

Gene ID: 101790765, updated on 8-Mar-2024

Summary

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Gene symbol
DCHS1
Gene description
dachsous cadherin-related 1
See related
EnsemblRapid:ENSAPLG00030002434
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
24
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 1 NC_051772.1 (207109224..207189913, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 1 NC_040046.1 (626914..677309)

Chromosome 1 - NC_051772.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 10 Neighboring gene tripeptidyl peptidase 1 Neighboring gene leucine carboxyl methyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-16
Names
dachsous 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051772.1 Reference ZJU1.0 Primary Assembly

    Range
    207109224..207189913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027465901.2 → XP_027321702.1  protocadherin-16 isoform X1

    UniProtKB/TrEMBL
    A0A8B9SIB3
    Related
    ENSAPLP00030005672.1, ENSAPLT00030006836.1
    Conserved Domains (1) summary
    cd11304
    Location:1096 → 1190
    Cadherin_repeat; Cadherin tandem repeat domain

  2. XM_038179045.1 → XP_038034973.1  protocadherin-16 isoform X3

    UniProtKB/TrEMBL
    A0A8B9SIB3
    Conserved Domains (1) summary
    cd11304
    Location:444 → 538
    Cadherin_repeat; Cadherin tandem repeat domain

  3. XM_038179039.1 → XP_038034967.1  protocadherin-16 isoform X2

    UniProtKB/TrEMBL
    A0A8B9SIB3
    Conserved Domains (1) summary
    cd11304
    Location:514 → 608
    Cadherin_repeat; Cadherin tandem repeat domain

  4. XM_038179036.1 → XP_038034964.1  protocadherin-16 isoform X1

    UniProtKB/TrEMBL
    A0A8B9SIB3
    Conserved Domains (1) summary
    cd11304
    Location:1096 → 1190
    Cadherin_repeat; Cadherin tandem repeat domain

  5. XM_038179037.1 → XP_038034965.1  protocadherin-16 isoform X1

    UniProtKB/TrEMBL
    A0A8B9SIB3
    Related
    ENSAPLP00030005686.1, ENSAPLT00030006852.1
    Conserved Domains (1) summary
    cd11304
    Location:1096 → 1190
    Cadherin_repeat; Cadherin tandem repeat domain
Nucleotide Protein
Heading Accession and Version

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