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PXN paxillin [ Anas platyrhynchos (mallard) ]

Gene ID: 101789742, updated on 8-Mar-2024

Summary

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Gene symbol
PXN
Gene description
paxillin
Locus tag
Anapl_02160
See related
EnsemblRapid:ENSAPLG00030023879
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See PXN in Genome Data Viewer
Location:
chromosome: 16
Exon count:
19
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 16 NC_051787.1 (7917486..7959069, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 16 NC_040061.1 (7470641..7512173)

Chromosome 16 - NC_051787.1Genomic Context describing neighboring genes Neighboring gene GCN1 activator of EIF2AK4 Neighboring gene ribosomal protein lateral stalk subunit P0 Neighboring gene U4 spliceosomal RNA Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endothelial cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paxillin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051787.1 Reference ZJU1.0 Primary Assembly

    Range
    7917486..7959069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038187675.1 → XP_038043603.1  paxillin isoform X5

    UniProtKB/TrEMBL
    A0A8B9SQ96
    Related
    ENSAPLP00030039914.1, ENSAPLT00030062436.1
    Conserved Domains (6) summary
    cd09338
    Location:443 → 495
    LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
    cd09407
    Location:384 → 435
    LIM2_Paxillin; The second LIM domain of paxillin
    cd09411
    Location:502 → 553
    LIM4_Paxillin; The fourth LIM domain of Paxillin
    cd09336
    Location:325 → 377
    LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
    NF000535
    Location:222 → 321
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    pfam03535
    Location:54 → 254
    Paxillin; Paxillin family

  2. XM_038187671.1 → XP_038043599.1  paxillin isoform X1

    UniProtKB/TrEMBL
    A0A8B9SQ96
    Conserved Domains (6) summary
    cd09338
    Location:475 → 527
    LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
    cd09407
    Location:416 → 467
    LIM2_Paxillin; The second LIM domain of paxillin
    cd09411
    Location:534 → 585
    LIM4_Paxillin; The fourth LIM domain of Paxillin
    cd09336
    Location:357 → 409
    LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
    NF000535
    Location:254 → 353
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    pfam03535
    Location:86 → 286
    Paxillin; Paxillin family

  3. XM_038187673.1 → XP_038043601.1  paxillin isoform X3

    UniProtKB/TrEMBL
    A0A8B9SQ96
    Conserved Domains (6) summary
    cd09338
    Location:461 → 513
    LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
    cd09407
    Location:402 → 453
    LIM2_Paxillin; The second LIM domain of paxillin
    cd09411
    Location:520 → 571
    LIM4_Paxillin; The fourth LIM domain of Paxillin
    cd09336
    Location:343 → 395
    LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
    NF000535
    Location:240 → 339
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    pfam03535
    Location:72 → 272
    Paxillin; Paxillin family

  4. XM_038187674.1 → XP_038043602.1  paxillin isoform X4

    UniProtKB/TrEMBL
    A0A8B9SQ96
    Conserved Domains (6) summary
    cd09338
    Location:451 → 503
    LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
    cd09407
    Location:392 → 443
    LIM2_Paxillin; The second LIM domain of paxillin
    cd09411
    Location:510 → 561
    LIM4_Paxillin; The fourth LIM domain of Paxillin
    cd09336
    Location:333 → 385
    LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
    NF000535
    Location:230 → 329
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    pfam03535
    Location:62 → 262
    Paxillin; Paxillin family

  5. XM_038187672.1 → XP_038043600.1  paxillin isoform X2

    UniProtKB/TrEMBL
    A0A8B9SQ96
    Conserved Domains (6) summary
    cd09338
    Location:463 → 515
    LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
    cd09407
    Location:404 → 455
    LIM2_Paxillin; The second LIM domain of paxillin
    cd09411
    Location:522 → 573
    LIM4_Paxillin; The fourth LIM domain of Paxillin
    cd09336
    Location:345 → 397
    LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
    NF000535
    Location:242 → 341
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    pfam03535
    Location:74 → 274
    Paxillin; Paxillin family

  6. XM_038187677.1 → XP_038043605.1  paxillin isoform X7

    Conserved Domains (3) summary
    cd09338
    Location:374 → 426
    LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
    cd09336
    Location:256 → 308
    LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
    cl02475
    Location:315 → 366
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  7. XM_038187676.1 → XP_038043604.1  paxillin isoform X6

    Conserved Domains (4) summary
    cd09338
    Location:401 → 453
    LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
    cd09411
    Location:460 → 511
    LIM4_Paxillin; The fourth LIM domain of Paxillin
    cd09336
    Location:283 → 335
    LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
    cl02475
    Location:342 → 393
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  8. XM_038187678.1 → XP_038043606.1  paxillin isoform X8

    Conserved Domains (2) summary
    PRK07994
    Location:349 → 462
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
    pfam03535
    Location:86 → 286
    Paxillin; Paxillin family
Nucleotide Protein
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