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LOC101760886 alpha-amylase isozyme 3C [ Setaria italica (foxtail millet) ]

Gene ID: 101760886, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101760886
Gene description
alpha-amylase isozyme 3C
Locus tag
SETIT_029874mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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Location:
chromosome: II
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) II NC_028451.1 (33279183..33282317)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675962.1 (33279183..33282260)

Chromosome II - NC_028451.1Genomic Context describing neighboring genes Neighboring gene abscisic acid 8'-hydroxylase 3 Neighboring gene alpha-amylase isozyme 3B-like Neighboring gene alpha-amylase isozyme 3C Neighboring gene alpha-amylase isozyme 3C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-amylase isozyme 3C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028451.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    33279183..33282317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004956958.2 → XP_004957015.1  alpha-amylase isozyme 3C

    UniProtKB/TrEMBL
    K3ZTE4
    Conserved Domains (1) summary
    cl26848
    Location:21 → 426
    Alpha-amyl_C2; Alpha-amylase C-terminal beta-sheet domain
Nucleotide Protein Strain
Heading Accession and Version

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