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Phf1 PHD finger protein 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101713089, updated on 8-Mar-2024

Summary

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Gene symbol
Phf1
Gene description
PHD finger protein 1
See related
Ensembl:ENSHGLG00000019206
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624754.1 (23400338..23405370, complement)

NW_004624754.1Genomic Context describing neighboring genes Neighboring gene synaptic Ras GTPase activating protein 1 Neighboring gene uncharacterized LOC110349629 Neighboring gene cutA divalent cation tolerance homolog Neighboring gene kinesin family member C1 Neighboring gene uncharacterized LOC110349546

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624754 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624754.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    23400338..23405370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021260023.1 → XP_021115682.1  PHD finger protein 1 isoform X1

    UniProtKB/TrEMBL
    G5BK19
    Conserved Domains (4) summary
    smart00333
    Location:29 → 80
    TUDOR; Tudor domain
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:188 → 239
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:540 → 565
    Mtf2_C; Polycomb-like MTF2 factor 2

  2. XM_004846793.3 → XP_004846850.1  PHD finger protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A0P6J960, G5BK19
    Conserved Domains (5) summary
    smart00333
    Location:29 → 80
    TUDOR; Tudor domain
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:188 → 239
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:541 → 566
    Mtf2_C; Polycomb-like MTF2 factor 2
    cl26464
    Location:335 → 517
    Atrophin-1; Atrophin-1 family

  3. XM_021260024.1 → XP_021115683.1  PHD finger protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A0P6J960, G5BK19
    Conserved Domains (5) summary
    smart00333
    Location:29 → 80
    TUDOR; Tudor domain
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:188 → 239
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:541 → 566
    Mtf2_C; Polycomb-like MTF2 factor 2
    cl26464
    Location:335 → 517
    Atrophin-1; Atrophin-1 family

  4. XM_021260025.1 → XP_021115684.1  PHD finger protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A0P6J960, G5BK19
    Related
    ENSHGLP00000027007.1, ENSHGLT00000027246.1
    Conserved Domains (5) summary
    smart00333
    Location:29 → 80
    TUDOR; Tudor domain
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:188 → 239
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:541 → 566
    Mtf2_C; Polycomb-like MTF2 factor 2
    cl26464
    Location:335 → 517
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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