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Col4a3 collagen type IV alpha 3 chain [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101709004, updated on 8-Mar-2024

Summary

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Gene symbol
Col4a3
Gene description
collagen type IV alpha 3 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
49
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624843.1 (1557756..1623936)

NW_004624843.1Genomic Context describing neighboring genes Neighboring gene rhomboid domain containing 1 Neighboring gene collagen type IV alpha 4 chain Neighboring gene mitochondrial fission factor Neighboring gene transmembrane 4 L six family member 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624843 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-3(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624843.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    1557756..1623936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021247019.1 → XP_021102678.1  collagen alpha-3(IV) chain

    Conserved Domains (2) summary
    pfam01391
    Location:677 → 730
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1232 → 1338
    C4; C-terminal tandem repeated domain in type 4 procollagen
Nucleotide Protein
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