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Lyst lysosomal trafficking regulator [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101707129, updated on 8-Mar-2024

Summary

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Gene symbol
Lyst
Gene description
lysosomal trafficking regulator
Locus tag
GW7_02705
See related
Ensembl:ENSHGLG00000015493
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
53
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624775.1 (14670498..14900501)

NW_004624775.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110351165 Neighboring gene uncharacterized LOC110351166 Neighboring gene septin-7 pseudogene Neighboring gene transcriptional regulator Kaiso-like Neighboring gene G protein subunit gamma 4 Neighboring gene protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624775 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysosomal-trafficking regulator
Names
Lysosomal-trafficking regulator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624775.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    14670498..14900501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013075773.2 → XP_012931227.1  lysosomal-trafficking regulator

    Related
    ENSHGLP00000021676.1, ENSHGLT00000021886.1
    Conserved Domains (5) summary
    smart01026
    Location:3138 → 3428
    Beach; Beige/BEACH domain
    COG2319
    Location:3542 → 3803
    WD40; WD40 repeat [General function prediction only]
    cd01201
    Location:3011 → 3123
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3534 → 3571
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:3535 → 3784
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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