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Kdm8 lysine demethylase 8 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101702352, updated on 8-Mar-2024

Summary

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Gene symbol
Kdm8
Gene description
lysine demethylase 8
Locus tag
GW7_19790
See related
Ensembl:ENSHGLG00000015770
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624782.1 (11884847..11903944)

NW_004624782.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106010370 Neighboring gene uncharacterized LOC110344190 Neighboring gene uncharacterized LOC110344189 Neighboring gene NSE1 homolog, SMC5-SMC6 complex component Neighboring gene interleukin 4 receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624782 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 8
Names
JmjC domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624782.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    11884847..11903944
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004855989.3 → XP_004856046.1  lysine-specific demethylase 8 isoform X2

    UniProtKB/TrEMBL
    G5BAL0
    Conserved Domains (1) summary
    pfam13621
    Location:190 → 396
    Cupin_8; Cupin-like domain

  2. XM_004855988.3 → XP_004856045.1  lysine-specific demethylase 8 isoform X1

    See identical proteins and their annotated locations for XP_004856045.1

    UniProtKB/TrEMBL
    G5BAL0
    Conserved Domains (1) summary
    pfam13621
    Location:190 → 411
    Cupin_8; Cupin-like domain

  3. XM_004855987.3 → XP_004856044.1  lysine-specific demethylase 8 isoform X1

    See identical proteins and their annotated locations for XP_004856044.1

    UniProtKB/TrEMBL
    G5BAL0
    Related
    ENSHGLP00000022101.1, ENSHGLT00000022312.1
    Conserved Domains (1) summary
    pfam13621
    Location:190 → 411
    Cupin_8; Cupin-like domain

RNA

  1. XR_002386583.1 RNA Sequence

  2. XR_002386582.1 RNA Sequence

  3. XR_002386584.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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