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Jade1 jade family PHD finger 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101702228, updated on 8-Mar-2024

Summary

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Gene symbol
Jade1
Gene description
jade family PHD finger 1
Locus tag
GW7_09791
See related
Ensembl:ENSHGLG00000002967
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Also known as
Phf17
Orthologs
human mouse all
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Genomic context

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See Jade1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624777.1 (9664111..9726266)

NW_004624777.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene 6.8 kDa mitochondrial proteolipid-like Neighboring gene sodium channel and clathrin linker 1 Neighboring gene kinesin-like protein KIF2A pseudogene Neighboring gene chromosome unknown C4orf33 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624777 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Jade-1
Names
PHD finger protein 17
Protein Jade-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624777.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    9664111..9726266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004854961.3 → XP_004855018.1  protein Jade-1 isoform X1

    See identical proteins and their annotated locations for XP_004855018.1

    UniProtKB/TrEMBL
    G5B439
    Conserved Domains (2) summary
    cd15671
    Location:258 → 368
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    cl26518
    Location:99 → 529
    EPL1; Enhancer of polycomb-like

  2. XM_004854963.3 → XP_004855020.1  protein Jade-1 isoform X1

    See identical proteins and their annotated locations for XP_004855020.1

    UniProtKB/TrEMBL
    G5B439
    Conserved Domains (2) summary
    cd15671
    Location:258 → 368
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    cl26518
    Location:99 → 529
    EPL1; Enhancer of polycomb-like

  3. XM_004854962.3 → XP_004855019.1  protein Jade-1 isoform X1

    See identical proteins and their annotated locations for XP_004855019.1

    UniProtKB/TrEMBL
    G5B439
    Conserved Domains (2) summary
    cd15671
    Location:258 → 368
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    cl26518
    Location:99 → 529
    EPL1; Enhancer of polycomb-like

  4. XM_004854964.3 → XP_004855021.1  protein Jade-1 isoform X1

    See identical proteins and their annotated locations for XP_004855021.1

    UniProtKB/TrEMBL
    G5B439
    Conserved Domains (2) summary
    cd15671
    Location:258 → 368
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    cl26518
    Location:99 → 529
    EPL1; Enhancer of polycomb-like

  5. XM_021236494.1 → XP_021092153.1  protein Jade-1 isoform X1

    UniProtKB/TrEMBL
    G5B439
    Related
    ENSHGLP00000004031.1, ENSHGLT00000004089.1
    Conserved Domains (2) summary
    cd15671
    Location:258 → 368
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    cl26518
    Location:99 → 529
    EPL1; Enhancer of polycomb-like

  6. XM_021236493.1 → XP_021092152.1  protein Jade-1 isoform X1

    UniProtKB/TrEMBL
    G5B439
    Conserved Domains (2) summary
    cd15671
    Location:258 → 368
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    cl26518
    Location:99 → 529
    EPL1; Enhancer of polycomb-like

  7. XM_021236495.1 → XP_021092154.1  protein Jade-1 isoform X1

    UniProtKB/TrEMBL
    G5B439
    Conserved Domains (2) summary
    cd15671
    Location:258 → 368
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    cl26518
    Location:99 → 529
    EPL1; Enhancer of polycomb-like

  8. XM_013075900.2 → XP_012931354.1  protein Jade-1 isoform X1

    See identical proteins and their annotated locations for XP_012931354.1

    UniProtKB/TrEMBL
    G5B439
    Conserved Domains (2) summary
    cd15671
    Location:258 → 368
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    cl26518
    Location:99 → 529
    EPL1; Enhancer of polycomb-like

  9. XM_021236496.1 → XP_021092155.1  protein Jade-1 isoform X2

    Conserved Domains (2) summary
    cd15671
    Location:203 → 313
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    cl26518
    Location:44 → 474
    EPL1; Enhancer of polycomb-like
Nucleotide Protein
Heading Accession and Version

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