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Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101701090, updated on 8-Mar-2024

Summary

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Gene symbol
Gdpd5
Gene description
glycerophosphodiester phosphodiesterase domain containing 5
See related
Ensembl:ENSHGLG00000009912
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624817.1 (1596687..1689428)

NW_004624817.1Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 6 Neighboring gene serpin family H member 1 Neighboring gene prefoldin subunit 4 pseudogene Neighboring gene kelch like family member 35 Neighboring gene ribosomal protein S3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624817 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphodiester phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerophosphodiester phosphodiesterase domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624817.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    1596687..1689428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021243245.1 → XP_021098904.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A0P6J9X3
    Conserved Domains (1) summary
    cl14615
    Location:227 → 581
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  2. XM_004863221.2 → XP_004863278.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

    See identical proteins and their annotated locations for XP_004863278.1

    UniProtKB/TrEMBL
    A0A0P6J9X3
    Related
    ENSHGLP00000013869.1, ENSHGLT00000014010.1
    Conserved Domains (1) summary
    cl14615
    Location:227 → 581
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  3. XM_004863223.2 → XP_004863280.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A0P6J9X3
    Related
    ENSHGLP00000013870.1, ENSHGLT00000014011.1
    Conserved Domains (2) summary
    COG0584
    Location:227 → 467
    UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
    cl14615
    Location:227 → 576
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  4. XM_021243246.1 → XP_021098905.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X3

    Conserved Domains (1) summary
    cl14615
    Location:167 → 521
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
Nucleotide Protein
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