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SLITRK4 SLIT and NTRK like family member 4 [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101694017, updated on 8-Mar-2024

Summary

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Gene symbol
SLITRK4
Gene description
SLIT and NTRK like family member 4
See related
Ensembl:ENSMPUG00000000450
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025422048.1 (9392212..9404743)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569335.1 (1089540..1098654, complement)

NW_025422048.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene U6atac minor spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene ADP-ribosylation factor 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for the domestic ferret. Bruder CE, et al. BMC Genomics, 2010 Apr 19. PMID 20403183, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SLIT and NTRK-like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025422048.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    9392212..9404743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045068154.1 → XP_044924089.1  SLIT and NTRK-like protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8U0RJX9
    Conserved Domains (4) summary
    sd00033
    Location:109 → 132
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:15 → 253
    internalin_A; class 1 internalin InlA
    pfam13855
    Location:402 → 461
    LRR_8; Leucine rich repeat
    cd21340
    Location:359 → 550
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  2. XM_013046743.2 → XP_012902197.1  SLIT and NTRK-like protein 4 isoform X1

    UniProtKB/TrEMBL
    M3XMZ6
    Related
    ENSMPUP00000000446.1
    Conserved Domains (5) summary
    smart00082
    Location:370 → 410
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:266 → 289
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:582 → 621
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:559 → 618
    LRR_8; Leucine rich repeat
    cl15307
    Location:688 → 720
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
Heading Accession and Version

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