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HP1BP3 heterochromatin protein 1 binding protein 3 [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101671275, updated on 8-Mar-2024

Summary

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Gene symbol
HP1BP3
Gene description
heterochromatin protein 1 binding protein 3
See related
Ensembl:ENSMPUG00000016092
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025422005.1 (14654666..14692634, complement)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569147.1 (24716596..24753671)

NW_025422005.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 17 Neighboring gene SH2 domain containing 5 Neighboring gene eukaryotic translation initiation factor 4 gamma 3 Neighboring gene uncharacterized LOC123387306 Neighboring gene endothelin converting enzyme 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. Camp JV, et al. PLoS One, 2012. PMID 22606336, Free PMC Article
  2. Sequencing, annotation, and characterization of the influenza ferret infectome. León AJ, et al. J Virol, 2013 Feb. PMID 23236062, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterochromatin protein 1-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025422005.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    14654666..14692634 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045063880.1 → XP_044919815.1  heterochromatin protein 1-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8U0ULC6, G9K4P9
    Conserved Domains (4) summary
    smart00526
    Location:252 → 318
    H15; Domain in histone families 1 and 5
    PHA03247
    Location:3 → 156
    PHA03247; large tegument protein UL36; Provisional
    cd00073
    Location:154 → 244
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:345 → 410
    Linker_histone; linker histone H1 and H5 family

  2. XM_045063878.1 → XP_044919813.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    G9K4P9, M3YXC5
    Conserved Domains (4) summary
    smart00526
    Location:253 → 319
    H15; Domain in histone families 1 and 5
    PHA03247
    Location:3 → 163
    PHA03247; large tegument protein UL36; Provisional
    cd00073
    Location:155 → 245
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:346 → 411
    Linker_histone; linker histone H1 and H5 family

  3. XM_045063883.1 → XP_044919818.1  heterochromatin protein 1-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8U0RAM2, G9K4P9
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

  4. XM_045063881.1 → XP_044919816.1  heterochromatin protein 1-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8U0RAM2, G9K4P9
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

  5. XM_045063879.1 → XP_044919814.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    G9K4P9, M3YXC5
    Conserved Domains (4) summary
    smart00526
    Location:253 → 319
    H15; Domain in histone families 1 and 5
    PHA03247
    Location:3 → 163
    PHA03247; large tegument protein UL36; Provisional
    cd00073
    Location:155 → 245
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:346 → 411
    Linker_histone; linker histone H1 and H5 family

  6. XM_004741275.3 → XP_004741332.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    G9K4P9, M3YXC5
    Related
    ENSMPUP00000015985.1
    Conserved Domains (4) summary
    smart00526
    Location:253 → 319
    H15; Domain in histone families 1 and 5
    PHA03247
    Location:3 → 163
    PHA03247; large tegument protein UL36; Provisional
    cd00073
    Location:155 → 245
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:346 → 411
    Linker_histone; linker histone H1 and H5 family

  7. XM_004741276.2 → XP_004741333.1  heterochromatin protein 1-binding protein 3 isoform X3

    See identical proteins and their annotated locations for XP_004741333.1

    UniProtKB/TrEMBL
    A0A8U0RAM2, G9K4P9
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

  8. XM_013048124.2 → XP_012903578.1  heterochromatin protein 1-binding protein 3 isoform X3

    See identical proteins and their annotated locations for XP_012903578.1

    UniProtKB/TrEMBL
    A0A8U0RAM2, G9K4P9
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

  9. XM_045063882.1 → XP_044919817.1  heterochromatin protein 1-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8U0RAM2, G9K4P9
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

  10. XM_045063884.1 → XP_044919819.1  heterochromatin protein 1-binding protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A8U0UKM5
    Conserved Domains (3) summary
    smart00526
    Location:253 → 319
    H15; Domain in histone families 1 and 5
    PHA03247
    Location:3 → 157
    PHA03247; large tegument protein UL36; Provisional
    cd00073
    Location:155 → 245
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
Nucleotide Protein
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