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OPN1SW opsin 1, short wave sensitive [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101662997, updated on 8-Mar-2024

Summary

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Gene symbol
OPN1SW
Gene description
opsin 1, short wave sensitive
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103920.1 (16528831..16532090)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558729.1 (21861297..21864583, complement)

NW_022103920.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 136 Neighboring gene U6 spliceosomal RNA Neighboring gene calumenin Neighboring gene U4 spliceosomal RNA Neighboring gene golgi associated RAB2 interactor 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phototransduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short-wave-sensitive opsin 1
Names
opsin 1 (cone pigments), short-wave-sensitive

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022103920.1 Reference ASM31398v2 Primary Assembly

    Range
    16528831..16532090
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004707803.2 → XP_004707860.1  short-wave-sensitive opsin 1

    Conserved Domains (1) summary
    cd15076
    Location:36 → 315
    7tmA_SWS1_opsin; short wave-sensitive 1 opsins, member of the class A family of seven-transmembrane G protein-coupled receptors
Nucleotide Protein
Heading Accession and Version

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