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NLRX1 NLR family member X1 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101658507, updated on 8-Mar-2024

Summary

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Gene symbol
NLRX1
Gene description
NLR family member X1
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022111363.1 (1991421..2003480, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558769.1 (1991966..2002380, complement)

NW_022111363.1Genomic Context describing neighboring genes Neighboring gene Cbl proto-oncogene Neighboring gene U2 small nuclear ribonucleoprotein B''-like Neighboring gene dynein regulatory complex subunit 12 homolog Neighboring gene NHERF family PDZ scaffold protein 4 Neighboring gene ATP binding cassette subfamily G member 4 Neighboring gene histone H4 transcription factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NLR family member X1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022111363.1 Reference ASM31398v2 Primary Assembly

    Range
    1991421..2003480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045283614.1 → XP_045139549.1  NLR family member X1

    Conserved Domains (3) summary
    sd00033
    Location:698 → 726
    LRR_RI; leucine-rich repeat [structural motif]
    cl39015
    Location:669 → 885
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cl40481
    Location:161 → 320
    YlqF_related_GTPase; Circularly permuted YlqF-related GTPases

  2. XM_045283615.1 → XP_045139550.1  NLR family member X1

    Conserved Domains (3) summary
    sd00033
    Location:698 → 726
    LRR_RI; leucine-rich repeat [structural motif]
    cl39015
    Location:669 → 885
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cl40481
    Location:161 → 320
    YlqF_related_GTPase; Circularly permuted YlqF-related GTPases

  3. XM_004712769.3 → XP_004712826.2  NLR family member X1

    Conserved Domains (3) summary
    sd00033
    Location:698 → 726
    LRR_RI; leucine-rich repeat [structural motif]
    cl39015
    Location:669 → 885
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cl40481
    Location:161 → 320
    YlqF_related_GTPase; Circularly permuted YlqF-related GTPases
Nucleotide Protein
Heading Accession and Version

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