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APAF1 apoptotic peptidase activating factor 1 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101656765, updated on 8-Mar-2024

Summary

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Gene symbol
APAF1
Gene description
apoptotic peptidase activating factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103898.1 (28790760..28880142, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558708.1 (28792983..28879799, complement)

NW_022103898.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and sterile alpha motif domain containing 1B Neighboring gene ATP synthase F(0) complex subunit C3, mitochondrial-like Neighboring gene 40S ribosomal protein S26-like Neighboring gene solute carrier family 25 member 3 Neighboring gene IKBKB interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apoptotic protease-activating factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022103898.1 Reference ASM31398v2 Primary Assembly

    Range
    28790760..28880142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004700750.2 → XP_004700807.1  apoptotic protease-activating factor 1

    Conserved Domains (5) summary
    cd00200
    Location:515 → 818
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cd08323
    Location:7 → 92
    CARD_APAF1; Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1
    sd00039
    Location:568 → 605
    7WD40; WD40 repeat [structural motif]
    pfam00931
    Location:129 → 374
    NB-ARC; NB-ARC domain
    pfam17908
    Location:453 → 509
    APAF1_C; APAF-1 helical domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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