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SLIT3 slit guidance ligand 3 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101647788, updated on 8-Mar-2024

Summary

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Gene symbol
SLIT3
Gene description
slit guidance ligand 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
38
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022111372.1 (59604061..60316321)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558702.1 (62704375..63416540, complement)

NW_022111372.1Genomic Context describing neighboring genes Neighboring gene spindle apparatus coiled-coil protein 1 Neighboring gene THAP domain-containing protein 5-like Neighboring gene pantothenate kinase 3 Neighboring gene arginyl-tRNA synthetase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Roundabout binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
slit homolog 3 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022111372.1 Reference ASM31398v2 Primary Assembly

    Range
    59604061..60316321
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004697123.2 → XP_004697180.1  slit homolog 3 protein

    Conserved Domains (10) summary
    TIGR00864
    Location:627 → 699
    PCC; polycystin cation channel protein
    smart00013
    Location:716 → 747
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:53 → 211
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00054
    Location:1065 → 1101
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00110
    Location:1150 → 1303
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    sd00033
    Location:55 → 77
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00008
    Location:1114 → 1144
    EGF; EGF-like domain
    pfam13855
    Location:767 → 826
    LRR_8; Leucine rich repeat
    NF033189
    Location:98 → 469
    internalin_A; class 1 internalin InlA
    cl21545
    Location:1457 → 1510
    GHB_like; Glycoprotein hormone beta chain homologues
Nucleotide Protein
Heading Accession and Version

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