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HEATR1 HEAT repeat containing 1 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101646184, updated on 8-Mar-2024

Summary

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Gene symbol
HEATR1
Gene description
HEAT repeat containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
46
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022111324.1 (93287583..93364074)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558762.1 (8720436..8796455)

NW_022111324.1Genomic Context describing neighboring genes Neighboring gene dynein light chain roadblock-type 1-like Neighboring gene NEDD4-like E3 ubiquitin-protein ligase WWP1 Neighboring gene galectin 8 Neighboring gene 60S ribosomal protein L23a-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of t-UTP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HEAT repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022111324.1 Reference ASM31398v2 Primary Assembly

    Range
    93287583..93364074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004712186.2 → XP_004712243.1  HEAT repeat-containing protein 1

    Conserved Domains (3) summary
    smart01036
    Location:1855 → 2008
    BP28CT; BP28CT (NUC211) domain
    sd00044
    Location:517 → 547
    HEAT; HEAT repeat [structural motif]
    pfam12397
    Location:238 → 354
    U3snoRNP10; U3 small nucleolar RNA-associated protein 10

  2. XM_045297878.1 → XP_045153813.1  HEAT repeat-containing protein 1

    Conserved Domains (3) summary
    smart01036
    Location:1855 → 2008
    BP28CT; BP28CT (NUC211) domain
    sd00044
    Location:517 → 547
    HEAT; HEAT repeat [structural motif]
    pfam12397
    Location:238 → 354
    U3snoRNP10; U3 small nucleolar RNA-associated protein 10
Nucleotide Protein
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