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COL4A4 collagen type IV alpha 4 chain [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101643909, updated on 8-Mar-2024

Summary

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Gene symbol
COL4A4
Gene description
collagen type IV alpha 4 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
47
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103899.1 (53900761..54035801, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558710.1 (53902647..54017002, complement)

NW_022103899.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene rhomboid domain containing 1 Neighboring gene collagen type IV alpha 3 chain Neighboring gene mitochondrial fission factor Neighboring gene transmembrane 4 L six family member 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-4(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022103899.1 Reference ASM31398v2 Primary Assembly

    Range
    53900761..54035801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045294258.1 → XP_045150193.1  collagen alpha-4(IV) chain

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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