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TRIM2 tripartite motif containing 2 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101643097, updated on 8-Mar-2024

Summary

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Gene symbol
TRIM2
Gene description
tripartite motif containing 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022109768.1 (3655488..3813501, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558734.1 (11296314..11361922)

NW_022109768.1Genomic Context describing neighboring genes Neighboring gene dynein light chain 1, cytoplasmic-like Neighboring gene ATP synthase subunit g, mitochondrial-like Neighboring gene meiotic nuclear divisions 1 Neighboring gene uncharacterized LOC123522353 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP3-like Neighboring gene FH2 domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022109768.1 Reference ASM31398v2 Primary Assembly

    Range
    3655488..3813501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045295812.1 → XP_045151747.1  tripartite motif-containing protein 2 isoform X4

    Conserved Domains (5) summary
    smart00502
    Location:161 → 287
    BBC; B-Box C-terminal domain
    smart00557
    Location:325 → 421
    IG_FLMN; Filamin-type immunoglobulin domains
    cd14960
    Location:471 → 748
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    cd16767
    Location:20 → 65
    RING-HC_TRIM2; RING finger, HC subclass, found in tripartite motif-containing protein 2 (TRIM2)
    cd19824
    Location:115 → 156
    Bbox2_TRIM2_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 2 (TRIM2) and similar proteins

  2. XM_045295811.1 → XP_045151746.1  tripartite motif-containing protein 2 isoform X4

    Conserved Domains (5) summary
    smart00502
    Location:161 → 287
    BBC; B-Box C-terminal domain
    smart00557
    Location:325 → 421
    IG_FLMN; Filamin-type immunoglobulin domains
    cd14960
    Location:471 → 748
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    cd16767
    Location:20 → 65
    RING-HC_TRIM2; RING finger, HC subclass, found in tripartite motif-containing protein 2 (TRIM2)
    cd19824
    Location:115 → 156
    Bbox2_TRIM2_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 2 (TRIM2) and similar proteins

  3. XM_045295809.1 → XP_045151744.1  tripartite motif-containing protein 2 isoform X2

  4. XM_045295808.1 → XP_045151743.1  tripartite motif-containing protein 2 isoform X1

  5. XM_004708714.4 → XP_004708771.2  tripartite motif-containing protein 2 isoform X3

  6. XM_030887193.2 → XP_030743053.1  tripartite motif-containing protein 2 isoform X4

    Conserved Domains (5) summary
    smart00502
    Location:161 → 287
    BBC; B-Box C-terminal domain
    smart00557
    Location:325 → 421
    IG_FLMN; Filamin-type immunoglobulin domains
    cd14960
    Location:471 → 748
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    cd16767
    Location:20 → 65
    RING-HC_TRIM2; RING finger, HC subclass, found in tripartite motif-containing protein 2 (TRIM2)
    cd19824
    Location:115 → 156
    Bbox2_TRIM2_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 2 (TRIM2) and similar proteins

  7. XM_045295810.1 → XP_045151745.1  tripartite motif-containing protein 2 isoform X4

    Conserved Domains (5) summary
    smart00502
    Location:161 → 287
    BBC; B-Box C-terminal domain
    smart00557
    Location:325 → 421
    IG_FLMN; Filamin-type immunoglobulin domains
    cd14960
    Location:471 → 748
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    cd16767
    Location:20 → 65
    RING-HC_TRIM2; RING finger, HC subclass, found in tripartite motif-containing protein 2 (TRIM2)
    cd19824
    Location:115 → 156
    Bbox2_TRIM2_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 2 (TRIM2) and similar proteins
Nucleotide Protein
Heading Accession and Version

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