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CHD1 chromodomain helicase DNA binding protein 1 [ Condylura cristata (star-nosed mole) ]

Gene ID: 101629596, updated on 8-Mar-2024

Summary

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Gene symbol
CHD1
Gene description
chromodomain helicase DNA binding protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Condylura cristata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Condylura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
101 current ConCri1.0 (GCF_000260355.1) Unplaced Scaffold NW_004567108.1 (20743879..20817687)

NW_004567108.1Genomic Context describing neighboring genes Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 Neighboring gene family with sequence similarity 174 member A Neighboring gene repulsive guidance molecule BMP co-receptor b Neighboring gene uncharacterized LOC105853353

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004567108.1 Unplaced Scaffold Reference ConCri1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Condylura cristata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ConCri1.0

Genomic

  1. NW_004567108.1 Reference ConCri1.0

    Range
    20743879..20817687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012721888.1 → XP_012577342.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    Conserved Domains (10) summary
    PHA03420
    Location:1673 → 1763
    PHA03420; E4 protein; Provisional
    cd00024
    Location:299 → 348
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    cd00046
    Location:493 → 638
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:477 → 758
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:796 → 895
    Helicase_C; Helicase conserved C-terminal domain
    pfam00385
    Location:383 → 436
    Chromo; Chromo (CHRromatin Organization MOdifier) domain
    pfam06658
    Location:1291 → 1366
    DUF1168; Protein of unknown function (DUF1168)
    pfam08648
    Location:1638 → 1740
    DUF1777; Protein of unknown function (DUF1777)
    pfam11496
    Location:711 → 964
    HDA2-3; Class II histone deacetylase complex subunits 2 and 3
    pfam13907
    Location:1490 → 1581
    DUF4208; Domain of unknown function (DUF4208)

  2. XM_004678114.2 → XP_004678171.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    Conserved Domains (10) summary
    PHA03420
    Location:1585 → 1675
    PHA03420; E4 protein; Provisional
    cd00024
    Location:299 → 348
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    cd00046
    Location:493 → 638
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:477 → 758
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:796 → 895
    Helicase_C; Helicase conserved C-terminal domain
    pfam00385
    Location:383 → 436
    Chromo; Chromo (CHRromatin Organization MOdifier) domain
    pfam06658
    Location:1291 → 1364
    DUF1168; Protein of unknown function (DUF1168)
    pfam08648
    Location:1550 → 1652
    DUF1777; Protein of unknown function (DUF1777)
    pfam11496
    Location:711 → 964
    HDA2-3; Class II histone deacetylase complex subunits 2 and 3
    pfam13907
    Location:1402 → 1493
    DUF4208; Domain of unknown function (DUF4208)
Nucleotide Protein
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