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SLITRK2 SLIT and NTRK like family member 2 [ Condylura cristata (star-nosed mole) ]

Gene ID: 101624951, updated on 8-Mar-2024

Summary

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Gene symbol
SLITRK2
Gene description
SLIT and NTRK like family member 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Condylura cristata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Condylura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ConCri1.0 (GCF_000260355.1) Unplaced Scaffold NW_004567120.1 (38449467..38456855)

NW_004567120.1Genomic Context describing neighboring genes Neighboring gene ribonuclease P protein subunit p25-like Neighboring gene SLIT and NTRK like family member 4 Neighboring gene uncharacterized LOC105853860 Neighboring gene transmembrane protein 257 Neighboring gene spermatid nuclear transition protein 4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004567120.1 Unplaced Scaffold Reference ConCri1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SLIT and NTRK-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Condylura cristata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ConCri1.0

Genomic

  1. NW_004567120.1 Reference ConCri1.0

    Range
    38449467..38456855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012727203.1 → XP_012582657.1  SLIT and NTRK-like protein 2

    See identical proteins and their annotated locations for XP_012582657.1

    Conserved Domains (7) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:82 → 217
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:496 → 509
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 111
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:423 → 466
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:399 → 459
    LRR_8; Leucine rich repeat
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  2. XM_004685854.2 → XP_004685911.1  SLIT and NTRK-like protein 2

    See identical proteins and their annotated locations for XP_004685911.1

    Conserved Domains (7) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:82 → 217
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:496 → 509
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 111
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:423 → 466
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:399 → 459
    LRR_8; Leucine rich repeat
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
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