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NFIB nuclear factor I B [ Condylura cristata (star-nosed mole) ]

Gene ID: 101624927, updated on 8-Mar-2024

Summary

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Gene symbol
NFIB
Gene description
nuclear factor I B
Gene type
protein coding
RefSeq status
MODEL
Organism
Condylura cristata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Condylura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ConCri1.0 (GCF_000260355.1) Unplaced Scaffold NW_004567107.1 (49636480..49862702, complement)

NW_004567107.1Genomic Context describing neighboring genes Neighboring gene multiple PDZ domain crumbs cell polarity complex component Neighboring gene 60S ribosomal protein L15-like Neighboring gene zinc finger DHHC-type palmitoyltransferase 21 Neighboring gene cerberus 1, DAN family BMP antagonist

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004567107.1 Unplaced Scaffold Reference ConCri1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor 1 B-type

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Condylura cristata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ConCri1.0

Genomic

  1. NW_004567107.1 Reference ConCri1.0

    Range
    49636480..49862702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012721408.1 → XP_012576862.1  nuclear factor 1 B-type isoform X8

    Conserved Domains (1) summary
    pfam00859
    Location:1 → 237
    CTF_NFI; CTF/NF-I family transcription modulation region

  2. XM_004677669.2 → XP_004677726.1  nuclear factor 1 B-type isoform X7

    See identical proteins and their annotated locations for XP_004677726.1

    Conserved Domains (3) summary
    pfam10524
    Location:10 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:209 → 415
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain

  3. XM_004677666.2 → XP_004677723.1  nuclear factor 1 B-type isoform X5

    Conserved Domains (3) summary
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:209 → 493
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:9 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  4. XM_004677665.2 → XP_004677722.1  nuclear factor 1 B-type isoform X2

    Conserved Domains (3) summary
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:209 → 489
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:9 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  5. XM_004677667.2 → XP_004677724.1  nuclear factor 1 B-type isoform X6

    See identical proteins and their annotated locations for XP_004677724.1

    Conserved Domains (4) summary
    PRK15127
    Location:385 → 475
    PRK15127; multidrug efflux RND transporter permease subunit AcrB
    pfam10524
    Location:10 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:209 → 416
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain

  6. XM_012721407.1 → XP_012576861.1  nuclear factor 1 B-type isoform X4

    Conserved Domains (3) summary
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:209 → 470
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:9 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  7. XM_012721406.1 → XP_012576860.1  nuclear factor 1 B-type isoform X3

    Conserved Domains (3) summary
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:209 → 502
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:9 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  8. XM_004677664.2 → XP_004677721.1  nuclear factor 1 B-type isoform X1

    Conserved Domains (3) summary
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:209 → 498
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:9 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
Nucleotide Protein
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