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CARF calcium responsive transcription factor [ Condylura cristata (star-nosed mole) ]

Gene ID: 101624454, updated on 8-Mar-2024

Summary

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Gene symbol
CARF
Gene description
calcium responsive transcription factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Condylura cristata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Condylura
Also known as
ALS2CR8
Orthologs
human mouse all
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Genomic context

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See CARF in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current ConCri1.0 (GCF_000260355.1) Unplaced Scaffold NW_004567103.1 (24098091..24133491, complement)

NW_004567103.1Genomic Context describing neighboring genes Neighboring gene neurobeachin like 1 Neighboring gene proteasome assembly chaperone 3 pseudogene Neighboring gene WD repeat domain 12 Neighboring gene islet cell autoantigen 1 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004567103.1 Unplaced Scaffold Reference ConCri1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-responsive transcription factor
Names
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Condylura cristata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ConCri1.0

Genomic

  1. NW_004567103.1 Reference ConCri1.0

    Range
    24098091..24133491 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012728088.1 → XP_012583542.1  calcium-responsive transcription factor isoform X1

    See identical proteins and their annotated locations for XP_012583542.1

    Conserved Domains (1) summary
    pfam15299
    Location:249 → 479
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  2. XM_012728091.1 → XP_012583545.1  calcium-responsive transcription factor isoform X1

    See identical proteins and their annotated locations for XP_012583545.1

    Conserved Domains (1) summary
    pfam15299
    Location:249 → 479
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  3. XM_012728094.1 → XP_012583548.1  calcium-responsive transcription factor isoform X1

    See identical proteins and their annotated locations for XP_012583548.1

    Conserved Domains (1) summary
    pfam15299
    Location:249 → 479
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  4. XM_012728097.1 → XP_012583551.1  calcium-responsive transcription factor isoform X2

    Conserved Domains (1) summary
    pfam15299
    Location:230 → 460
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  5. XM_012728101.1 → XP_012583555.1  calcium-responsive transcription factor isoform X3

    Conserved Domains (1) summary
    pfam15299
    Location:113 → 343
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
Nucleotide Protein
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