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ATG16L2 autophagy related 16 like 2 [ Condylura cristata (star-nosed mole) ]

Gene ID: 101619297, updated on 8-Mar-2024

Summary

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Gene symbol
ATG16L2
Gene description
autophagy related 16 like 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Condylura cristata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Condylura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current ConCri1.0 (GCF_000260355.1) Unplaced Scaffold NW_004567116.1 (37918333..37933037)

NW_004567116.1Genomic Context describing neighboring genes Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 Neighboring gene 60S ribosomal protein L12 pseudogene Neighboring gene StAR related lipid transfer domain containing 10 Neighboring gene FCH and double SH3 domains 2 Neighboring gene purinergic receptor P2Y2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004567116.1 Unplaced Scaffold Reference ConCri1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative stranded viral RNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 16-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Condylura cristata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ConCri1.0

Genomic

  1. NW_004567116.1 Reference ConCri1.0

    Range
    37918333..37933037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012725589.1 → XP_012581043.1  autophagy-related protein 16-2 isoform X4

    Conserved Domains (3) summary
    COG2319
    Location:218 → 512
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:225 → 502
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:235 → 272
    7WD40; WD40 repeat [structural motif]

  2. XM_004683175.2 → XP_004683232.2  autophagy-related protein 16-2 isoform X1

    Conserved Domains (4) summary
    COG2319
    Location:322 → 616
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:329 → 606
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08614
    Location:17 → 201
    ATG16; Autophagy protein 16 (ATG16)
    sd00039
    Location:339 → 376
    7WD40; WD40 repeat [structural motif]

  3. XM_012725587.1 → XP_012581041.1  autophagy-related protein 16-2 isoform X2

    Conserved Domains (4) summary
    COG2319
    Location:301 → 595
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:308 → 585
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08614
    Location:17 → 201
    ATG16; Autophagy protein 16 (ATG16)
    sd00039
    Location:318 → 355
    7WD40; WD40 repeat [structural motif]

  4. XM_012725588.1 → XP_012581042.1  autophagy-related protein 16-2 isoform X3

    Conserved Domains (4) summary
    COG2319
    Location:241 → 535
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:248 → 525
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08614
    Location:17 → 205
    ATG16; Autophagy protein 16 (ATG16)
    sd00039
    Location:258 → 295
    7WD40; WD40 repeat [structural motif]

RNA

  1. XR_001145484.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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