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Fat3 FAT atypical cadherin 3 [ Octodon degus (degu) ]

Gene ID: 101591625, updated on 8-Mar-2024

Summary

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Gene symbol
Fat3
Gene description
FAT atypical cadherin 3
See related
Ensembl:ENSODEG00000002606
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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See Fat3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524785.1 (1870486..2445109)

NW_004524785.1Genomic Context describing neighboring genes Neighboring gene glucosamine-6-phosphate isomerase 1-like Neighboring gene histone H2A variant 1-like Neighboring gene dickkopf-related protein 4-like Neighboring gene U6 spliceosomal RNA Neighboring gene melatonin receptor 1B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524785 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin Fat 3
Names
FAT tumor suppressor homolog 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524785.1 Reference OctDeg1.0 Primary Assembly

    Range
    1870486..2445109
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004644764.2 → XP_004644821.1  protocadherin Fat 3

    UniProtKB/TrEMBL
    A0A6P3FDZ2
    Related
    ENSODEP00000003396.1, ENSODET00000003467.1
    Conserved Domains (4) summary
    cd11304
    Location:3241 → 3337
    Cadherin_repeat; Cadherin tandem repeat domain
    cd00054
    Location:4057 → 4096
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam02210
    Location:3865 → 3994
    Laminin_G_2; Laminin G domain
    cl09101
    Location:283 → 357
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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