U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Lrp5 LDL receptor related protein 5 [ Octodon degus (degu) ]

Gene ID: 101590797, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Lrp5
Gene description
LDL receptor related protein 5
See related
Ensembl:ENSODEG00000017493
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524594.1 (20190216..20271832, complement)

NW_004524594.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 6 regulatory subunit 3 Neighboring gene 60S ribosomal protein L37 pseudogene Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene chromosome unknown C11orf24 homolog Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004524594 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
low-density lipoprotein receptor-related protein 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524594.1 Reference OctDeg1.0 Primary Assembly

    Range
    20190216..20271832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023710590.1 → XP_023566358.1  low-density lipoprotein receptor-related protein 5

    UniProtKB/TrEMBL
    A0A6P6E2Z5
    Related
    ENSODEP00000023896.1, ENSODET00000024168.1
    Conserved Domains (7) summary
    smart00135
    Location:331 → 373
    LY; Low-density lipoprotein-receptor YWTD domain
    cd00112
    Location:1146 → 1180
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cd05819
    Location:556 → 592
    NHL; NHL repeat [structural motif]
    pfam00057
    Location:1068 → 1105
    Ldl_recept_a; Low-density lipoprotein receptor domain class A
    pfam00058
    Location:1 → 39
    Ldl_recept_b; Low-density lipoprotein receptor repeat class B
    cl18310
    Location:521 → 714
    NHL; NHL repeat unit of beta-propeller proteins
    pfam14670
    Location:135 → 172
    FXa_inhibition; Coagulation Factor Xa inhibitory site
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.