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Arhgef9 Cdc42 guanine nucleotide exchange factor 9 [ Octodon degus (degu) ]

Gene ID: 101588848, updated on 8-Mar-2024

Summary

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Gene symbol
Arhgef9
Gene description
Cdc42 guanine nucleotide exchange factor 9
See related
Ensembl:ENSODEG00000002707
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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See Arhgef9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524787.1 (1824346..2089759, complement)

NW_004524787.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L4 pseudogene Neighboring gene small nucleolar RNA U13 Neighboring gene AP-2 complex subunit beta-like Neighboring gene 40S ribosomal protein S13 pseudogene Neighboring gene histone H3.3-like Neighboring gene ribosome biogenesis regulatory protein homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524787 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rho guanine nucleotide exchange factor 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524787.1 Reference OctDeg1.0 Primary Assembly

    Range
    1824346..2089759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023705024.1 → XP_023560792.1  rho guanine nucleotide exchange factor 9 isoform X1

    UniProtKB/TrEMBL
    A0A6P6DL70
    Related
    ENSODEP00000003535.1, ENSODET00000003609.1
    Conserved Domains (3) summary
    cd11975
    Location:14 → 75
    SH3_ARHGEF9; Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9
    smart00325
    Location:114 → 293
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    cd01224
    Location:298 → 437
    PH_Collybistin_ASEF; Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain

  2. XM_023705026.1 → XP_023560794.1  rho guanine nucleotide exchange factor 9 isoform X4

    UniProtKB/TrEMBL
    A0A6P6DL40
    Conserved Domains (3) summary
    cd11975
    Location:1 → 47
    SH3_ARHGEF9; Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9
    smart00325
    Location:86 → 265
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    cd01224
    Location:270 → 409
    PH_Collybistin_ASEF; Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain

  3. XM_023705027.1 → XP_023560795.1  rho guanine nucleotide exchange factor 9 isoform X4

    UniProtKB/TrEMBL
    A0A6P6DL40
    Conserved Domains (3) summary
    cd11975
    Location:1 → 47
    SH3_ARHGEF9; Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9
    smart00325
    Location:86 → 265
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    cd01224
    Location:270 → 409
    PH_Collybistin_ASEF; Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain

  4. XM_004644806.2 → XP_004644863.1  rho guanine nucleotide exchange factor 9 isoform X2

    See identical proteins and their annotated locations for XP_004644863.1

    UniProtKB/TrEMBL
    A0A6P3FE15
    Related
    ENSODEP00000003533.1, ENSODET00000003607.1
    Conserved Domains (4) summary
    cd11975
    Location:7 → 68
    SH3_ARHGEF9; Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9
    cd01224
    Location:291 → 430
    PH_Collybistin_ASEF; Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain
    pfam00169
    Location:336 → 422
    PH; PH domain
    pfam00621
    Location:107 → 286
    RhoGEF; RhoGEF domain

  5. XM_023705025.1 → XP_023560793.1  rho guanine nucleotide exchange factor 9 isoform X3

    UniProtKB/TrEMBL
    A0A6P6DM98
    Conserved Domains (3) summary
    cd11975
    Location:7 → 68
    SH3_ARHGEF9; Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9
    smart00325
    Location:107 → 286
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    cd01224
    Location:291 → 430
    PH_Collybistin_ASEF; Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain

  6. XM_023705028.1 → XP_023560796.1  rho guanine nucleotide exchange factor 9 isoform X5

    UniProtKB/TrEMBL
    A0A6P6DLH5
    Related
    ENSODEP00000003532.1, ENSODET00000003606.1
    Conserved Domains (2) summary
    smart00325
    Location:47 → 226
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    cd01224
    Location:231 → 370
    PH_Collybistin_ASEF; Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain

  7. XM_023705029.1 → XP_023560797.1  rho guanine nucleotide exchange factor 9 isoform X6

    UniProtKB/TrEMBL
    A0A6P3FQK2
    Conserved Domains (2) summary
    smart00325
    Location:5 → 184
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    cd01224
    Location:189 → 328
    PH_Collybistin_ASEF; Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain

  8. XM_004644807.2 → XP_004644864.1  rho guanine nucleotide exchange factor 9 isoform X6

    See identical proteins and their annotated locations for XP_004644864.1

    UniProtKB/TrEMBL
    A0A6P3FQK2
    Conserved Domains (2) summary
    smart00325
    Location:5 → 184
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    cd01224
    Location:189 → 328
    PH_Collybistin_ASEF; Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain
Nucleotide Protein
Heading Accession and Version

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