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Sf3a2 splicing factor 3a subunit 2 [ Octodon degus (degu) ]

Gene ID: 101587184, updated on 8-Mar-2024

Summary

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Gene symbol
Sf3a2
Gene description
splicing factor 3a subunit 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524626.1 (7090102..7097124)

NW_004524626.1Genomic Context describing neighboring genes Neighboring gene DOT1 like histone lysine methyltransferase Neighboring gene pleckstrin homology domain containing J1 Neighboring gene anti-Mullerian hormone Neighboring gene junctional sarcoplasmic reticulum protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524626 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3A subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524626.1 Reference OctDeg1.0 Primary Assembly

    Range
    7090102..7097124
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004632699.2 → XP_004632756.1  splicing factor 3A subunit 2

    UniProtKB/TrEMBL
    A0A6P6EK83
    Conserved Domains (2) summary
    COG5246
    Location:1 → 217
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
    cl26386
    Location:303 → 420
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  2. XM_023716956.1 → XP_023572724.1  splicing factor 3A subunit 2

    UniProtKB/TrEMBL
    A0A6P6EK83
    Conserved Domains (2) summary
    COG5246
    Location:1 → 217
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
    cl26386
    Location:303 → 420
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  3. XM_023716957.1 → XP_023572725.1  splicing factor 3A subunit 2

    UniProtKB/TrEMBL
    A0A6P6EK83
    Conserved Domains (2) summary
    COG5246
    Location:1 → 217
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
    cl26386
    Location:303 → 420
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
Nucleotide Protein
Heading Accession and Version

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