U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Nectin4 nectin cell adhesion molecule 4 [ Octodon degus (degu) ]

Gene ID: 101584706, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Nectin4
Gene description
nectin cell adhesion molecule 4
See related
Ensembl:ENSODEG00000009227
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524692.1 (5760813..5777266)

NW_004524692.1Genomic Context describing neighboring genes Neighboring gene cytochrome b-c1 complex subunit 7 pseudogene Neighboring gene prefoldin subunit 2 Neighboring gene kelch domain containing 9 Neighboring gene Rho GTPase activating protein 30 Neighboring gene upstream transcription factor 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004524692 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in symbiont entry into host cell IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
nectin-4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524692.1 Reference OctDeg1.0 Primary Assembly

    Range
    5760813..5777266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004639916.2 → XP_004639973.1  nectin-4 isoform X2

    UniProtKB/TrEMBL
    A0A6P3FKX2
    Related
    ENSODEP00000012438.1, ENSODET00000012607.1
    Conserved Domains (3) summary
    cd07704
    Location:149 → 242
    Ig2_Nectin-3-4_like; Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins
    smart00410
    Location:259 → 332
    IG_like; Immunoglobulin like
    cl11960
    Location:46 → 146
    Ig; Immunoglobulin domain

  2. XM_023699866.1 → XP_023555634.1  nectin-4 isoform X1

    UniProtKB/TrEMBL
    A0A6P6D6A8
    Conserved Domains (3) summary
    pfam13927
    Location:259 → 319
    Ig_3; Immunoglobulin domain
    cd07704
    Location:149 → 242
    Ig2_Nectin-3-4_like; Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins
    cl11960
    Location:46 → 146
    Ig; Immunoglobulin domain

  3. XM_023699867.1 → XP_023555635.1  nectin-4 isoform X3

    UniProtKB/TrEMBL
    A0A6P6D6Y7
    Conserved Domains (3) summary
    pfam13927
    Location:259 → 319
    Ig_3; Immunoglobulin domain
    cd07704
    Location:149 → 242
    Ig2_Nectin-3-4_like; Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins
    cl11960
    Location:46 → 146
    Ig; Immunoglobulin domain

  4. XM_004639917.2 → XP_004639974.1  nectin-4 isoform X4

    UniProtKB/TrEMBL
    A0A6P3F6J6
    Related
    ENSODEP00000012439.1, ENSODET00000012608.1
    Conserved Domains (3) summary
    cd07704
    Location:149 → 242
    Ig2_Nectin-3-4_like; Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins
    smart00410
    Location:259 → 332
    IG_like; Immunoglobulin like
    cl11960
    Location:46 → 146
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.