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Pcdh1 protocadherin 1 [ Octodon degus (degu) ]

Gene ID: 101580440, updated on 8-Mar-2024

Summary

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Gene symbol
Pcdh1
Gene description
protocadherin 1
See related
Ensembl:ENSODEG00000013806
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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See Pcdh1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524761.1 (3664361..3691276)

NW_004524761.1Genomic Context describing neighboring genes Neighboring gene protocadherin 12 Neighboring gene DAP3 binding cell death enhancer 1 Neighboring gene polymerase delta-interacting protein 2 pseudogene Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524761 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524761.1 Reference OctDeg1.0 Primary Assembly

    Range
    3664361..3691276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004643853.3 → XP_004643910.1  protocadherin-1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3FP44
    Conserved Domains (3) summary
    cd11304
    Location:512 → 608
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:815 → 1026
    Protocadherin; Protocadherin
    cl09101
    Location:60 → 138
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  2. XM_023704015.1 → XP_023559783.1  protocadherin-1 isoform X2

    UniProtKB/TrEMBL
    A0A6P6DJB4
    Related
    ENSODEP00000018731.1, ENSODET00000018967.1
    Conserved Domains (3) summary
    cd11304
    Location:490 → 586
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:793 → 1004
    Protocadherin
    cl09101
    Location:38 → 116
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  3. XM_023704016.1 → XP_023559784.1  protocadherin-1 isoform X3

    UniProtKB/TrEMBL
    A0A6P6DIA2
    Conserved Domains (3) summary
    cd11304
    Location:512 → 608
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:815 → 1026
    Protocadherin
    cl09101
    Location:60 → 138
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

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